Splashery
Molecule, a still.

Playground

Molecule

A molecule is a group of atoms held together by chemical bonds.

Lane
7, Atoms
Kind
Built from a recipe
Your own
Your own molecule
Sound
Yes
Hands-on
Yes
Licenses
Public domain, CC0

How to play

Tap it to heat it up. Hands-on: pull an atom; its bonds stretch and it springs back.

Its controls

ControlKindRangeStart
Heat it upTap
HeatButton
MoleculeList31 choicesCaffeine

About it

A molecule is a group of atoms held together by chemical bonds. This one is a ball-and-stick model: each ball is an atom, colored by its element (carbon dark gray, hydrogen white, oxygen red, nitrogen blue), and each stick is a bond.

It starts as caffeine, C8H10N4O2, the stimulant in coffee and tea; the Splash tab has sugars, medicines, vitamins and DNA too. The atoms always jiggle a little on their bonds, as real ones do; tap it to heat it up and they shake hard, the light hydrogens furthest, each bond stretching and squeezing with its atoms, then it cools. In the Splash tab, pick another molecule, or type a name, a formula or a SMILES string (a way of writing a molecule on one line) to build your own.

Details

Splats
Opens at 200,000 at Mid Detail, 60,004 at Low, and up to 260,000 at Max
Your own files
.mol, .sdf, .sd, .xyz, .pdb, .ent, .txt

Sources and credits

WorkByLicense
PubChem 3D conformers (glucose, aspirin, ATP and the rest)NCBI PubChemPublic domain
RCSB Protein Data Bank entry 1BNA (B-DNA dodecamer), hydrogens addedH. R. Drew, R. M. Wing, T. Takano, C. Broka, S. Tanaka, K. Itakura, R. E. DickersonCC0 1.0

In The Splash Manual

  1. Chapter 7: Real data as splats

Share it

This link opens it in the Playground. To put it on your own page, add the element and one script tag. Every option.

https://splashery.app/play/?toy=molecule<script type="module" src="https://splashery.app/play/src/element.js"></script> <splashery-toy toy="molecule"></splashery-toy>

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